GCcontent: GC content for hg19 human genome at each 1Mb interval.
In SomatiCA: SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
Description
Usage
Format
Source
Description
GC content was calculated for hg19 human genome at each 1Mb interval. SomatiCA uses this file to correct GC bias.
Usage
1
Format
A data frame with 2897 rows on the following 4 variables.
chrA character vector.
interval1A numeric vector.
interval2A numeric vector.
GCA numeric vector. GC content.
Source
Assembly human genome (hg19,
GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)) was downloaded from http://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/.
SomatiCA documentation built on Oct. 5, 2016, 4:18 a.m.
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Description Usage Format Source
Description
GC content was calculated for hg19 human genome at each 1Mb interval. SomatiCA uses this file to correct GC bias.
Usage
1 |
Format
A data frame with 2897 rows on the following 4 variables.
chrA character vector.
interval1A numeric vector.
interval2A numeric vector.
GCA numeric vector. GC content.
Source
Assembly human genome (hg19, GRCh37 Genome Reference Consortium Human Reference 37 (GCA_000001405.1)) was downloaded from http://hgdownload.soe.ucsc.edu/goldenPath/hg19/chromosomes/.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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