segwithratio: Segments with somatic ratio.
In SomatiCA: SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
Description
SomatiCA segmentation and somatic ratio estimation results for data(glio).
Usage
1
Format
A data frame with 143 segments on the following 6 variables.
chromosomeA character vector.
startAn integer vector.
endAn integer vector.
medLAFA numeric vector. Median LAF in tumor sample.
medgermlineLAFA numeric vector. Median LAF in control sample.
ratioA numeric vector. Estimated somatic ratio.
SomatiCA documentation built on Oct. 5, 2016, 4:18 a.m.
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Description
SomatiCA segmentation and somatic ratio estimation results for data(glio).
Usage
1 |
Format
A data frame with 143 segments on the following 6 variables.
chromosomeA character vector.
startAn integer vector.
endAn integer vector.
medLAFA numeric vector. Median LAF in tumor sample.
medgermlineLAFA numeric vector. Median LAF in control sample.
ratioA numeric vector. Estimated somatic ratio.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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