Files in SomatiCA
SomatiCA: identifying, characterizing, and quantifying somatic copy number aberrations from cancer genome sequencing
SomatiCA/DESCRIPTION
SomatiCA/NAMESPACE
SomatiCA/R
SomatiCA/R/AllGeneric.R
SomatiCA/R/GCbiasRemoval.R
SomatiCA/R/GCcount.R
SomatiCA/R/MergeSegment.R
SomatiCA/R/SomatiCA-internal.R
SomatiCA/R/SomatiCAFormat.R
SomatiCA/R/SomatiCAUsersGuide.R
SomatiCA/R/SomatiCApipe.R
SomatiCA/R/admixtureRate.R
SomatiCA/R/collapse.R
SomatiCA/R/copynumberCorrected.R
SomatiCA/R/denoise.R
SomatiCA/R/larsCBSsegment.R
SomatiCA/R/plotSegment.R
SomatiCA/R/plotSubclonality.R
SomatiCA/R/refineSegment.R
SomatiCA/R/segmentGCbiasRemoval.R
SomatiCA/R/somaticRatio.R
SomatiCA/R/subclonality.R
SomatiCA/R/zzz.R
SomatiCA/build
SomatiCA/build/vignette.rds
SomatiCA/data
SomatiCA/data/GCcontent.rda
SomatiCA/data/datalist
SomatiCA/data/segwithratio.rda
SomatiCA/inst
SomatiCA/inst/CITATION
SomatiCA/inst/doc
SomatiCA/inst/doc/SomatiCA.R
SomatiCA/inst/doc/SomatiCA.Rnw
SomatiCA/inst/doc/SomatiCA.pdf
SomatiCA/inst/doc/SomatiCAUserGuide.pdf
SomatiCA/man
SomatiCA/man/GCbiasRemoval.Rd
SomatiCA/man/GCcontent.Rd
SomatiCA/man/GCcount.Rd
SomatiCA/man/MergeSegment.Rd
SomatiCA/man/SomatiCA-package.Rd
SomatiCA/man/SomatiCAFormat-methods.Rd
SomatiCA/man/SomatiCAUsersGuide.Rd
SomatiCA/man/SomatiCApipe.Rd
SomatiCA/man/admixtureRate.Rd
SomatiCA/man/collapse.Rd
SomatiCA/man/copynumberCorrected.Rd
SomatiCA/man/denoise.Rd
SomatiCA/man/larsCBSsegment.Rd
SomatiCA/man/plotSegment.Rd
SomatiCA/man/plotSubclonality.Rd
SomatiCA/man/refineSegment.Rd
SomatiCA/man/segmentGCbiasRemoval.Rd
SomatiCA/man/segwithratio.Rd
SomatiCA/man/somaticRatio.Rd
SomatiCA/man/subclonality.Rd
SomatiCA/vignettes
SomatiCA/vignettes/SomatiCA.Rnw
