Files in SpatialExperiment
S4 Class for Spatial Experiments handling
NAMESPACE
DESCRIPTION
README
build/vignette.rds
R/AllGenerics.R
R/SpatialExperimentMethods.R
R/Miscellaneous.R
R/VisiumExperimentMethods.R
R/Validity.R
R/AllClasses.R
vignettes/MouseCoronalVisiumAnalysis.Rmd
vignettes/seqFISHAnalysis.Rmd
man/show-SpatialExperiment-method.Rd
man/spatialCoords-SpatialExperiment-method.Rd
man/spatialCoords-set-SpatialExperiment-method.Rd
man/imagePaths-VisiumExperiment-method.Rd
man/VisiumExperiment.Rd
man/spatialCoordsNames-SpatialExperiment-method.Rd
man/SpatialExperiment.Rd
man/scaleFactors-set-VisiumExperiment-method.Rd
man/imagePaths-set-VisiumExperiment-method.Rd
man/scaleFactors-VisiumExperiment-method.Rd
man/show-VisiumExperiment-method.Rd
man/isInTissue-VisiumExperiment-method.Rd
tests/testthat.R
tests/testthat/test_visium_experiment.R
tests/testthat/test_spatial_coordinnates.R
inst/NEWS
inst/doc/MouseCoronalVisiumAnalysis.Rmd
inst/doc/seqFISHAnalysis.html
inst/doc/MouseCoronalVisiumAnalysis.R
inst/doc/seqFISHAnalysis.Rmd
inst/doc/seqFISHAnalysis.R
inst/doc/MouseCoronalVisiumAnalysis.html
inst/extdata/README
inst/extdata/10x_visium/features.tsv
inst/extdata/10x_visium/ve.RDS
inst/extdata/10x_visium/scalefactors_json.json
inst/extdata/10x_visium/barcodes.tsv
inst/extdata/10x_visium/matrix.mtx
inst/extdata/10x_visium/tissue_positions_list.tsv
inst/extdata/10x_visium/images/tissue_lowres_image.png
inst/extdata/seqFISH/seqfish_normalized_cortex_b2_testing.txt
inst/extdata/seqFISH/seqfish_cell_labels.tsv
inst/extdata/seqFISH/tasic_scRNAseq_training_b2.txt
inst/extdata/seqFISH/fcortex.coordinates.txt
inst/extdata/seqFISH/tasic_scRNAseq_labels.tsv
inst/extdata/seqFISH/seqFISH.RData
