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R/Enrichment.R
In TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
Defines functions
tfbsEnrichment
tfbsEnrichment <- function(pwm, query, background, cutoff=0.8){
queryHits <- searchSeq(pwm, query, strand="+", min.score=cutoff)
foo1 <- as(queryHits, "GRanges")
backgroundHits <- searchSeq(pwm, background, strand="+", min.score=cutoff)
foo2 <- as(backgroundHits, "GRanges")
}
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TFBSTools documentation built on Nov. 8, 2020, 8:14 p.m.
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Defines functions tfbsEnrichment
tfbsEnrichment <- function(pwm, query, background, cutoff=0.8){
queryHits <- searchSeq(pwm, query, strand="+", min.score=cutoff)
foo1 <- as(queryHits, "GRanges")
backgroundHits <- searchSeq(pwm, background, strand="+", min.score=cutoff)
foo2 <- as(backgroundHits, "GRanges")
}
Try the TFBSTools package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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