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tests/testthat/test_Coercion.R
In TFBSTools: Software Package for Transcription Factor Binding Site (TFBS) Analysis
test_that("SiteSetAsDataFrame", {
data(MA0003.2)
pwm1 <- toPWM(MA0003.2)
seq1 <- "GAATTCTCTCTTGTTGTAGCATTGCCTCAGGGCACACGTGCAAAATG"
siteset <- searchSeq(pwm1, seq1, seqname="seq1", strand="+", min.score="80%")
expect_equal(ncol(as(siteset, "DataFrame")), 12L)
})
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TFBSTools documentation built on Nov. 8, 2020, 8:14 p.m.
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test_that("SiteSetAsDataFrame", {
data(MA0003.2)
pwm1 <- toPWM(MA0003.2)
seq1 <- "GAATTCTCTCTTGTTGTAGCATTGCCTCAGGGCACACGTGCAAAATG"
siteset <- searchSeq(pwm1, seq1, seqname="seq1", strand="+", min.score="80%")
expect_equal(ncol(as(siteset, "DataFrame")), 12L)
})
Try the TFBSTools package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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