conditions: Accessor functions for the 'conditions' information in a...

In XBSeq: Test for differential expression for RNA-seq data

Description

Conditions extract the experimental design information similar as used in DESeq.

Usage

## S4 method for signature 'XBSeqDataSet'
conditions(object,...)
## S4 replacement method for signature 'XBSeqDataSet'
conditions(object,...) <- value

Arguments

object	a XBSeqDataSet
value	experimental design information
...	Further arguments will be ignored

Value

The experimental design information for a XBSeqDataSet object

References

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

See Also

XBSeqDataSet

Examples

   data(ExampleData)
   conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
   XB <- XBSeqDataSet(Observed, Background, conditions)
   conditions(XB)

XBSeq documentation built on Nov. 8, 2020, 11:12 p.m.