dispTable: Access the dispersion table information for a XBSeqDataSet...
In XBSeq: Test for differential expression for RNA-seq data

Description Usage Arguments Value Author(s) References See Also Examples

A method adopted from DESeq to examine the dispersion table information for a XBSeqDataSet object

1	dispTable(object, ...)

`object`	a XBSeqDataSet
`...`	further argumnts are ignored

Dispersion table information for a XBSeqDataSet object

Yuanhang Liu

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

estimateSCV, dispEst, XBSeqDataSet

   conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
   data(ExampleData)
   XB <- XBSeqDataSet(Observed, Background, conditions)
   XB <- estimateRealCount(XB)
   XB <- estimateSizeFactors(XB)
   XB <- estimateSCV(XB, fitType='local')
   dispTable(XB)