dispTable: Access the dispersion table information for a XBSeqDataSet...

Description Usage Arguments Value Author(s) References See Also Examples

Description

A method adopted from DESeq to examine the dispersion table information for a XBSeqDataSet object

Usage

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dispTable(object, ...)

Arguments

object

a XBSeqDataSet

...

further argumnts are ignored

Value

Dispersion table information for a XBSeqDataSet object

Author(s)

Yuanhang Liu

References

H. I. Chen, Y. Liu, Y. Zou, Z. Lai, D. Sarkar, Y. Huang, et al., "Differential expression analysis of RNA sequencing data by incorporating non-exonic mapped reads," BMC Genomics, vol. 16 Suppl 7, p. S14, Jun 11 2015.

See Also

estimateSCV, dispEst, XBSeqDataSet

Examples

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   conditions <- factor(c(rep('C1', 3), rep('C2', 3)))
   data(ExampleData)
   XB <- XBSeqDataSet(Observed, Background, conditions)
   XB <- estimateRealCount(XB)
   XB <- estimateSizeFactors(XB)
   XB <- estimateSCV(XB, fitType='local')
   dispTable(XB)

XBSeq documentation built on Nov. 1, 2018, 2:24 a.m.