API for a4Base
Automated Affymetrix Array Analysis Base Package
| Global functions | |
|---|---|
| .onAttach | Source code |
| ExpressionSetWithComputation-class | Man page |
| a4palette | Man page Source code |
| addQuantilesColors | Man page Source code |
| boxPlot | Man page Source code |
| combineTwoExpressionSet | Man page Source code |
| computeLogRatio | Man page Source code |
| createExpressionSet | Man page Source code |
| fTest | Source code |
| filterVarInt | Man page Source code |
| grid.imageGrob | Source code |
| heatmap.expressionSet | Man page Source code |
| histPvalue | Man page |
| histPvalue,MArrayLM-method | Man page |
| histPvalue,limma-method | Man page |
| histPvalue,numeric-method | Man page |
| histpvalueplotter | Man page Source code |
| imageGrob | Source code |
| lassoReg | Man page Source code |
| limmaReg | Man page Source code |
| limmaTwoLevels | Man page Source code |
| logReg | Man page Source code |
| makeImageRect | Source code |
| nlcvTT | Man page |
| oaColors | Man page Source code |
| oaPalette | Man page Source code |
| panel.cor | Source code |
| panel.plotSmoothScat | Source code |
| plot1gene | Man page |
| plotComb2Samples | Man page Source code |
| plotCombMultSamples | Man page Source code |
| plotCombination2genes | Man page Source code |
| plotLogRatio | Man page Source code |
| probabilitiesPlot | Man page Source code |
| probe2gene | Man page Source code |
| profilesPlot | Man page |
| propDEgenes | Man page |
| propDEgenes,limma | Man page |
| propDEgenes,limma-method | Man page |
| propDEgenes,numeric | Man page |
| propDEgenes,numeric-method | Man page |
| propDEgenes-methods | Man page |
| propdegenescalculation | Man page Source code |
| replicates | Man page Source code |
| spectralMap | Man page |
| spectralMap,ExpressionSet,character | Man page |
| spectralMap,ExpressionSet,character-method | Man page |
| spectralMap-methods | Man page |
| splitTitle | Source code |
| tTest | Man page Source code |
| tTest2 | Source code |
| topTable,MArrayLM | Man page |
| topTable,MArrayLM-method | Man page |
| topTable,fTest | Man page |
| topTable,fTest-method | Man page |
| topTable,limma | Man page |
| topTable,limma-method | Man page |
| topTable,tTest | Man page |
| topTable,tTest-method | Man page |
| topTable-methods | Man page |
| volcanoPlot | Man page |
| volcanoPlot,ExpressionSet,character | Man page |
| volcanoPlot,limma,missing,character | Man page |
| volcanoPlot,limma,missing,character-method | Man page |
| volcanoPlot,limma,missing,missing | Man page |
| volcanoPlot,limma,missing,missing-method | Man page |
| volcanoPlot,numeric,numeric,character | Man page |
| volcanoPlot,numeric,numeric,character-method | Man page |
| volcanoPlot,numeric,numeric,missing | Man page |
| volcanoPlot,numeric,numeric,missing-method | Man page |
| volcanoPlot,tTest,character | Man page |
| volcanoPlot,tTest,missing | Man page |
| volcanoPlot,tTest,missing,character-method | Man page |
| volcanoPlot,tTest,missing,missing-method | Man page |
| volcanoPlot-methods | Man page |
| volcanoplotter | Man page Source code |
