Man pages for affyPLM
Methods for fitting probe-level models
| affyPLM-internal | Internal affyPLM functions |
| bg.correct.LESN | LESN - Low End Signal is Noise Background corrections |
| fitPLM | Fit a Probe Level Model to Affymetrix Genechip Data. |
| MAplot | Relative M vs. A plots |
| normalize.exprSet | Normalization applied to ExpressionSets |
| normalize.quantiles.probeset | Quantile Normalization applied to probesets |
| normalize.scaling | Scaling normalization |
| PLMset2exprSet | Convert a PLMset to an ExpressionSet |
| PLMset-class | Class PLMset |
| preprocess | Background correct and Normalize |
| pseudo | Coloring pseudo chip images |
| ReadRMAExpress | Read RMAExpress computed expression values |
| rmaPLM | Fit a RMA to Affymetrix Genechip Data as a PLMset |
| threestep | Three Step expression measures |
| threestepPLM | Three Step expression measures returned as a PLMset |
