Files in affyPLM

Methods for fitting probe-level models

CHANGELOG

NAMESPACE

DESCRIPTION

build/vignette.rds

src/PLM_log_avg.h

src/do_PLMthreestep.h

src/read_rmaexpress.c

src/threestep_summary_methods.c

src/LESN.c

src/PLM_avg_log.h

src/rlm_PLM.c

src/chipbackground.c

src/psi_fns.h

src/scaling.c

src/PLM_median_logPM.c

src/idealmismatch.c

src/threestep_PLM.c

src/transfns.c

src/PLM_median_logPM.h

src/PLM_biweight.h

src/PLM_modelmatrix.c

src/threestep_summary.h

src/Makevars.win

src/rma_common.h

src/threestep_summary_methods.h

src/rmaPLM_pseudo.h

src/preprocess.c

src/rma_common.c

src/do_PLMthreestep.c

src/PLM_medianpolish.h

src/PLM_avg_log.c

src/do_PLMrma.c

src/rlm_threestep.h

src/preprocess.h

src/PLM_medianpolish.c

src/PLM_biweight.c

src/rma_PLM.c

src/PLM_medianPM.c

src/do_PLMrma.h

src/qnorm_probeset.c

src/threestep.c

src/PLM_modelmatrix.h

src/do_PLMrlm.h

src/SCAB.c

src/PLM_medianPM.h

src/threestep_common.c

src/Makevars

src/rmaPLM_pseudo.c

src/common_types.h

src/threestep_summary_methods_param.h

src/matrix_functions.c

src/LESN.h

src/matrix_functions.h

src/nthLargestPM.c

src/scaling.h

src/qnorm_probeset.h

src/dqrls.h

src/do_PLMrlm.c

src/threestep_common.h

src/PLM_log_avg.c

src/transfns.h

src/threestep_summary.c

src/rlm_threestep.c

src/common_types.c

src/idealmismatch.h

src/lm_threestep.c

src/lm_threestep.h

src/nthLargestPM.h

src/psi_fns.c

R/quantile_extensions.R R/PLMSet2exprSet.R R/PLMset.R R/fitPLM.R R/LESN.R R/threestep.R R/normalize.scaling.R R/preprocess.R R/internalfunctions.R R/ReadRMAExpress.R R/threestepPLM.R R/bg.correct.gcrma.R R/rmaPLM.R R/init_fns.R R/normalize.exprSet.R

vignettes/negresid.png

vignettes/00Index.dcf

vignettes/AffyExtensions.bib

vignettes/ThreeStep.Rnw

vignettes/MAplots.Rnw

vignettes/QualityAssess.Rnw

vignettes/AffyExtensions.Rnw

vignettes/weights.png

vignettes/posresid.png

vignettes/resid.png

man/ReadRMAExpress.Rd man/pseudo.Rd man/fitPLM.Rd man/normalize.scaling.Rd man/PLMset-class.Rd man/bg.correct.LESN.Rd man/threestep.Rd man/normalize.exprSet.Rd man/rmaPLM.Rd man/preprocess.Rd man/affyPLM-internal.Rd man/normalize.quantiles.probeset.Rd man/threestepPLM.Rd man/MAplot.Rd man/PLMset2exprSet.Rd tests/preprocess_tests.R tests/threestepPLM_tests.R tests/PLM_tests.R tests/C_code_tests.R

inst/CITATION

inst/doc/QualityAssess.R inst/doc/AffyExtensions.pdf inst/doc/QualityAssess.pdf inst/doc/ThreeStep.R

inst/doc/ThreeStep.Rnw

inst/doc/MAplots.Rnw

inst/doc/QualityAssess.Rnw

inst/doc/MAplots.R inst/doc/AffyExtensions.R

inst/doc/AffyExtensions.Rnw

inst/doc/ThreeStep.pdf inst/doc/MAplots.pdf

affyPLM documentation built on Nov. 8, 2020, 6:53 p.m.