This function is designed to compute counts for a Venn diagram. It is
slightly different from
vennCounts in the
additional ability to compute counts for genes that are differentially
expressed in the same direction.
One of "same", "both", "up", "down". See details for more information.
A fold change to filter samples. This is primarily here for
consistency with the corresponding argument in
vennCounts will return identical
results except for the "same" method. This will only select those genes that
both pass the criteria of
decideTests as well as being
differentially expressed in the same direction. Note that this is different
from the "both" method, which simply requires that a given gene be
differentially expressed in e.g., two different comparisons without any
requirement that the direction be the same.
James W. MacDonald <firstname.lastname@example.org>
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