API for affycoretools
Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Global functions
addAnnot Source code
addLines Source code
affyLinks Man page Source code
affycoretools Man page
affycoretools-defunct Man page
affycoretools-package Man page
affystart Man page Source code
allToMat Source code
annBM Man page Source code
annotateEset Man page
annotateEset,ExpressionSet,AffyExonPDInfo-method Man page
annotateEset,ExpressionSet,AffyExpressionPDInfo-method Man page
annotateEset,ExpressionSet,AffyGenePDInfo-method Man page
annotateEset,ExpressionSet,AffyHTAPDInfo-method Man page
annotateEset,ExpressionSet,ChipDb-method Man page
annotateEset,ExpressionSet,character-method Man page
annotateEset,ExpressionSet,data.frame-method Man page
colvec Source code
convertIDs Source code
dataAndHeatmapPage Man page Source code
dataFromNetaffx Source code
drawVenn Source code
ensemblLinks Man page Source code
entrezLinks Man page Source code
fixHeaderAndGo Man page Source code
foldFilt Man page Source code
foldFiltBM Man page Source code
geneSetPage Man page Source code
getCols Man page Source code
getMainProbes Man page Source code
goLinks Man page Source code
gsHeatmap Man page Source code
hyperG2annaffy Man page Source code
hyperGoutput Man page Source code
intNames Man page Source code
limma2annaffy Man page Source code
limma2biomaRt Man page Source code
listToVector Source code
make.cl Man page Source code
makeFullDf Source code
makeGenePlots Source code
makeGoGeneTable Man page Source code
makeGoTable Man page Source code
makeHmap Man page Source code
makeImages Man page Source code
makeIndices Man page Source code
makeVenn Man page
makeVenn,DGEGLM-method Man page
makeVenn,MArrayLM-method Man page
maplot Man page Source code
mirna2mrna Man page Source code
nuccoreLinks Man page Source code
onLoad Source code
outPut Source code
outputRomer Man page
outputRomer,DGEList,DGEGLM-method Man page
outputRomer,EList,MArrayLM-method Man page
outputRomer,ExpressionSet,MArrayLM-method Man page
pca.legend Man page Source code
pcaPCH Source code
plotDeg Man page Source code
plotHist Man page Source code
plotPCA Man page
plotPCA,ExpressionSet-method Man page
plotPCA,matrix-method Man page
probes2table Man page Source code
probes2tableBM Man page Source code
queryMaker Source code
remove.axis.and.padding Source code
runRomer Man page
runRomer,DGEList-method Man page
runRomer,EList-method Man page
runRomer,ExpressionSet-method Man page
tableFilt Man page Source code
venn4Way Man page Source code
vennCounts2 Man page Source code
vennLinks Source code
vennPage Man page Source code
vennSelect Man page Source code
vennSelect2 Man page Source code
vennSelectBM Man page Source code
vennSelectFC Man page Source code
whichMains Source code
writeFit Man page Source code
affycoretools documentation built on Nov. 18, 2017, 4:14 a.m.