R/Defunct.R

In affycoretools: Functions useful for those doing repetitive analyses with Affymetrix GeneChips

Defines functions vennSelect probes2table limma2annaffy hyperGoutput hyperG2annaffy vennSelectFC foldFilt foldFiltBM probes2tableBM limma2biomaRt vennSelectBM annBM

Documented in annBM foldFilt foldFiltBM hyperG2annaffy hyperGoutput limma2annaffy limma2biomaRt probes2table probes2tableBM vennSelect vennSelectBM vennSelectFC

annBM <- function(...) .Defunct("getBM","biomaRt")
vennSelectBM <- function(...) .Defunct("makeVenn")
limma2biomaRt <- function(...) .Defunct("limma2biomart is defunct, see Refactoring Affycoretools vignette\n")
probes2tableBM <- function(...) .Defunct("getBM","biomaRt")
foldFiltBM <- function(...) .Defunct("getBM", "biomaRt")
foldFilt <- function(...) .Defunct("HTMLReport","ReportingTools")
vennSelectFC <- function(...) .Defunct("makeVenn")
hyperG2annaffy <- function(...) .Defunct("makeGoTable")
hyperGoutput <- function(...) .Defunct("makeGoTable")
limma2annaffy <- function(...) .Defunct("limma2annaffy is defunct, see Refactoring Affycoretools vignette\n")
probes2table <- function(...) .Defunct("probes2table is defunct, see Refactoring Affycoretools vignette\n")
vennSelect <- function(...) .Defunct("makeVenn")

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