diversity_beta_boxplot: Beta diversity boxplot

In animalcules: Interactive microbiome analysis toolkit

Description

Beta diversity boxplot

Usage

diversity_beta_boxplot(
  MAE,
  tax_level,
  input_beta_method,
  input_select_beta_condition
)

Arguments

MAE	A multi-assay experiment object
tax_level	The taxon level used for organisms
input_beta_method	bray, jaccard
input_select_beta_condition	Which condition to group samples

Value

A plotly object

Examples

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
p <- diversity_beta_boxplot(toy_data,
                            tax_level = 'genus',
                            input_beta_method = 'bray',
                            input_select_beta_condition = 'DISEASE')
p

animalcules documentation built on Nov. 8, 2020, 6:47 p.m.