filter_summary_pie_box: Data visualization by pie chart / box plot

In animalcules: Interactive microbiome analysis toolkit

Description

Data visualization by pie chart / box plot

Usage

filter_summary_pie_box(MAE, samples_discard, filter_type, sample_condition)

Arguments

MAE	A multi-assay experiment object
samples_discard	The list of samples to filter
filter_type	Either 'By Microbes' or 'By Metadata'
sample_condition	Which condition to check e.g. 'SEX'

Value

A plotly object

Examples

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
result <- filter_summary_pie_box(toy_data,
                                 samples_discard = c('subject_2', 'subject_4'),
                                 filter_type = 'By Microbes',
                                 sample_condition = 'SEX')
result

animalcules documentation built on Nov. 8, 2020, 6:47 p.m.