mae_pick_organisms: Modify organisms of multi-assay experiment object
In animalcules: Interactive microbiome analysis toolkit

Description Usage Arguments Value Examples

Modify organisms of multi-assay experiment object

1	mae_pick_organisms(MAE, isolate_organisms = NULL, discard_organisms = NULL)

`MAE`	A multi-assay experiment object
`isolate_organisms`	Isolate specific organisms e.g. ti\|001, ti\|002
`discard_organisms`	Discard specific organisms e.g. ti\|001, ti\|002

A multi-assay experiment object

data_dir = system.file('extdata/MAE.rds', package = 'animalcules')
toy_data <- readRDS(data_dir)
subset <- mae_pick_organisms(toy_data, 
isolate_organisms=c('ti|001', 'ti|002'))