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annmap provides annotation mappings for Affymetrix exon arrays and coordinate based queries to support deep sequencing data analysis. Database access is hidden behind the API which provides a set of functions such as genesInRange(), geneToExon(), exonDetails(), etc. Functions to plot gene architecture and BAM file data are also provided. Underlying data are from Ensembl.
Package details |
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Author | Tim Yates <Tim.Yates@cruk.manchester.ac.uk> |
Bioconductor views | Annotation Microarray OneChannel ReportWriting Transcription Visualization |
Maintainer | Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk> |
License | GPL-2 |
Version | 1.32.0 |
URL | http://annmap.cruk.manchester.ac.uk |
Package repository | View on Bioconductor |
Installation |
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