annotations: example_annotations data

Description Usage Format Source

Description

A GRanges of precomputed annotations for CpG features. Created by doing build_annotations(genome='hg19', annotations = 'hg19_cpgs').

Usage

1

Format

A GRanges object with the CpG feature annotations for hg19 and containing mcols:

id

The internal ID for the annotation

tx_id

All NA, since these are not associated with tx_ids

gene_id

All NA, since there are not associated Entrez IDs

symbols

All NA, since there are not associated gene symbols

type

A character indicating the type of annotation. Including: 'hg19_cpg_islands', 'hg19_cpg_shores', 'hg19_cpg_shelves', and 'hg19_cpg_inter'.

Source

The AnnotationHub resource for hg19 CpG features.


annotatr documentation built on Nov. 8, 2020, 8:16 p.m.