Description Usage Arguments Value
View source: R/build_annotations.R
AnnotationHub package, retrieve transcript level lncRNA annotations for either human (GRCh38) or mouse (GRCm38). If the genome is 'hg19', use the permalink from GENCODE and
rtracklayer::import() to download and process.
build_lncrna_annots(genome = c("hg19", "hg38", "mm10"))
The genome assembly.
GRanges object with
id giving the
transcript_type from the GENCODE file,
tx_id being the Ensembl transcript ID,
gene_id being the Entrez ID coming from a mapping of gene symbol to Entrez ID,
symbol being the gene_name from the GENCODE file, and the
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