build_cpg_annots: A helper function to build CpG related annotations.
In annotatr: Annotation of Genomic Regions to Genomic Annotations
Description
Usage
Arguments
Value
View source: R/build_annotations.R
Description
Using the AnnotationHub package, extract CpG island track for the appropriate genome and construct the shores, shelves, and interCGI annotations as desired.
Usage
1
2
3
4
build_cpg_annots(
genome = annotatr::builtin_genomes(),
annotations = annotatr::builtin_annotations()
)
Arguments
genome
The genome assembly.
annotations
A character vector with entries of the form [genome]_cpg_{islands,shores,shelves,inter}.
Value
A list of GRanges objects.
annotatr documentation built on Nov. 8, 2020, 8:16 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/build_annotations.R
Description
Using the AnnotationHub package, extract CpG island track for the appropriate genome and construct the shores, shelves, and interCGI annotations as desired.
Usage
1 2 3 4 | build_cpg_annots(
genome = annotatr::builtin_genomes(),
annotations = annotatr::builtin_annotations()
)
|
Arguments
genome |
The genome assembly. |
annotations |
A character vector with entries of the form |
Value
A list of GRanges objects.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.