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artMS provides a set of tools for the analysis of proteomics label-free datasets. It takes as input the MaxQuant search result output (evidence.txt file) and performs quality control, relative quantification using MSstats, downstream analysis and integration. artMS also provides a set of functions to re-format and make it compatible with other analytical tools, including, SAINTq, SAINTexpress, Phosfate, and PHOTON. Check [http://artms.org](http://artms.org) for details.
Package details |
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Author | David Jimenez-Morales [aut, cre] (<https://orcid.org/0000-0003-4356-6461>), Alexandre Rosa Campos [aut, ctb] (<https://orcid.org/0000-0003-3988-7764>), John Von Dollen [aut], Nevan Krogan [aut] (<https://orcid.org/0000-0003-4902-337X>), Danielle Swaney [aut, ctb] (<https://orcid.org/0000-0001-6119-6084>) |
Bioconductor views | Annotation BiomedicalInformatics Clustering DifferentialExpression GeneSetEnrichment ImmunoOncology MassSpectrometry MultipleComparison Normalization Proteomics QualityControl SystemsBiology |
Maintainer | David Jimenez-Morales <biodavidjm@gmail.com> |
License | GPL (>= 3) + file LICENSE |
Version | 1.8.3 |
URL | http://artms.org |
Package repository | View on Bioconductor |
Installation |
Install the latest version of this package by entering the following in R:
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