class-beadLevelData: Class "beadLevelData"
In beadarray: Quality assessment and low-level analysis for Illumina BeadArray data

Description Objects from the Class Slots/List Components Methods Accessing data from the class Author(s) See Also Examples

A class for storing red and green channel foreground and background intensities from an Illumina experiment.

Objects can be created by calls of the form new("beadLevelData"), but are usually created by readIllumina.

Objects of this class contain the following slots

`beadData`:	A list of arrays, indexed by array name. Each item in this list is itself a list, containing enviroments holding the data for that array.
`sectionData`:	a list containing information. Each item in the list is a data frame containing one row for each section
`experimentData`:	a list containing the annotation of the platform, link to the sdf file and type of data (slide or Sentrix Array Matrix)
`history`:	Character vector storing the operations performed on this object.

show(beadLevelData): Printing method for BeadLevelList

sectionNames(object,arrays=NULL): Returns the strip/array names from a
numBeads(object,arrays=NULL): Returns the number of beads on selected arrays

getBeadData: retrieve data
insertBeadData: Input or modify existing data

Mark Dunning, Mike Smith

readIllumina

if(require(beadarrayExampleData)){


data(exampleBLData)

sectionNames(exampleBLData)

head(exampleBLData[[1]])

getBeadData(exampleBLData, array=1, what="Grn")[1:10]


}