API for blima
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level
| Global functions | |
|---|---|
| aggregateAndPreprocess | Man page |
| bacgroundCorrect | Man page |
| bacgroundCorrectSingleArray | Man page |
| backgroundChannelSubtract | Man page |
| backgroundChannelSubtractSingleArray | Man page |
| blima | Man page |
| blima-package | Man page |
| channelExistsIntegrityWithLogicalVectorList | Man page |
| checkIntegrity | Man page |
| checkIntegrityLogical | Man page |
| checkIntegrityOfListOfBeadLevelDataObjects | Man page |
| checkIntegrityOfSingleBeadLevelDataObject | Man page |
| chipArrayStatistics | Man page |
| createSummarizedMatrix | Man page |
| doAction | Man page |
| doProbeTTests | Man page |
| doTTests | Man page |
| filterBg | Man page |
| getNextVector | Man page |
| initMeanDistribution | Man page |
| insertColumn | Man page |
| interpolateSortedVector | Man page |
| interpolateSortedVectorRcpp_ | Man page Source code |
| log2TransformPositive | Man page |
| meanDistribution | Man page |
| nonParametricEstimator | Man page |
| nonPositiveCorrect | Man page |
| nonPositiveCorrectSingleArray | Man page |
| numberOfDistributionElements | Man page |
| performXieCorrection | Man page |
| plotBackgroundImageAfterCorrection | Man page |
| plotBackgroundImageBeforeCorrection | Man page |
| quantileNormalize | Man page |
| readToVector | Man page |
| selectedChannelTransform | Man page |
| selectedChannelTransformSingleArray | Man page |
| singleArrayNormalize | Man page |
| singleChannelExistsIntegrityWithLogicalVector | Man page |
| singleCheckIntegrityLogicalVector | Man page |
| singleNumberOfDistributionElements | Man page |
| updateMeanDistribution | Man page |
| varianceBeadStabilise | Man page |
| varianceBeadStabiliseSingleArray | Man page |
| vstFromLumi | Man page |
| writeBackgroundImages | Man page |
| xieBacgroundCorrect | Man page |
| xieBacgroundCorrectSingleArray | Man page |
