varianceBeadStabiliseSingleArray: Bead level VST.

In blima: Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level

Description

This function is not intended to direct use it takes single beadLevelData object and do bead level variance stabilisation.

Usage

varianceBeadStabiliseSingleArray(b, normalizationMod = NULL, 
    quality = "qua", channelInclude = "bgf", channelOutput = "vst")

Arguments

b	Object beadLevelData.
normalizationMod	NULL for normalization of all input b. Otherwise specifies logical vector of the length equals to the number of arrays in b.
quality	Quality to analyze, default is "qua".
channelInclude	This field allows user to set channel with weights which have to be in 0,1. All zero weighted items are excluded from t-test. You can turn this off by setting this NULL. This option may be used together with bacgroundCorrect method or/and with beadarray QC (defaults to "bgf").
channelOutput	Output from VST.

Author(s)

Vojt<c4><9b>ch Kulvait

blima documentation built on Nov. 8, 2020, 8:15 p.m.