Files in blima
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level
NEWS
NAMESPACE
DESCRIPTION
build/vignette.rds
build/partial.rdb
src/RcppExports.cpp
src/interpolateSortedVector.cpp
R/statisticsAndVisualisation.R
R/RcppExports.R
R/utils.R
R/standardbgCorrect.R
R/analyzeBeadLevel.R
R/quantileNormalize.R
R/bgCorrect.R
R/analyzeProbeLevel.R
R/reporting.R
R/vst.R
vignettes/bibliography.bib
vignettes/blima.rnw
vignettes/content/03varianceStabilizing01.tex
vignettes/content/04quantileNormalize.tex
vignettes/content/02backgroundCorrection01.tex
vignettes/content/01introduction02.tex
vignettes/content/03varianceStabilizing02.tex
vignettes/content/02backgroundCorrection02.tex
vignettes/content/05annotation02.tex
vignettes/content/06dataTesting01.tex
vignettes/content/01introduction03.tex
vignettes/content/05annotation01.tex
vignettes/content/06dataTesting02.tex
vignettes/content/07summarization.tex
vignettes/content/01introduction01.tex
vignettes/content/02backgroundCorrection03.tex
vignettes/content/06dataTesting03.tex
man/selectedChannelTransform.Rd
man/nonPositiveCorrectSingleArray.Rd
man/nonPositiveCorrect.Rd
man/checkIntegrity.Rd
man/chipArrayStatistics.Rd
man/quantileNormalize.Rd
man/backgroundChannelSubtractSingleArray.Rd
man/interpolateSortedVector.Rd
man/numberOfDistributionElements.Rd
man/checkIntegrityLogical.Rd
man/singleNumberOfDistributionElements.Rd
man/log2TransformPositive.Rd
man/performXieCorrection.Rd
man/writeBackgroundImages.Rd
man/singleChannelExistsIntegrityWithLogicalVector.Rd
man/nonParametricEstimator.Rd
man/createSummarizedMatrix.Rd
man/readToVector.Rd
man/checkIntegrityOfSingleBeadLevelDataObject.Rd
man/blima-package.Rd
man/bacgroundCorrectSingleArray.Rd
man/interpolateSortedVectorRcpp_.Rd
man/plotBackgroundImageBeforeCorrection.Rd
man/xieBacgroundCorrect.Rd
man/getNextVector.Rd
man/backgroundChannelSubtract.Rd
man/checkIntegrityOfListOfBeadLevelDataObjects.Rd
man/varianceBeadStabilise.Rd
man/doAction.Rd
man/varianceBeadStabiliseSingleArray.Rd
man/initMeanDistribution.Rd
man/updateMeanDistribution.Rd
man/filterBg.Rd
man/bacgroundCorrect.Rd
man/xieBacgroundCorrectSingleArray.Rd
man/insertColumn.Rd
man/meanDistribution.Rd
man/aggregateAndPreprocess.Rd
man/doTTests.Rd
man/singleCheckIntegrityLogicalVector.Rd
man/plotBackgroundImageAfterCorrection.Rd
man/doProbeTTests.Rd
man/singleArrayNormalize.Rd
man/channelExistsIntegrityWithLogicalVectorList.Rd
man/selectedChannelTransformSingleArray.Rd
man/vstFromLumi.Rd
inst/blima-package.Rd
inst/doc/blima.rnw
inst/doc/blima.R
inst/doc/blima.pdf
