vstFromLumi: Function from LGPL lumi package 2.16.0

In blima: Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level

Description

This function is derived from copy and paste of lumi::vst function. Since lumi package has extensive imports I decided to hardcode this function to the blima instead of importing lumi package.

Usage

vstFromLumi(u, std, nSupport = min(length(u), 500), backgroundStd = NULL, 
    lowCutoff = 1/3)

Arguments

u	The mean of probe beads
std	The standard deviation of the probe beads
nSupport	Something for c3 guess.
backgroundStd	Estimate the background variance c3. Input should be variance according to article, not SD.
lowCutoff	Something for c3 guess.

Author(s)

authors are Pan Du, Simon Lin, the function was edited by Vojt<c4><9b>ch Kulvait

References

http://www.bioconductor.org/packages/release/bioc/html/lumi.html

blima documentation built on Nov. 8, 2020, 8:15 p.m.