API for breakpointR
Find breakpoints in Strand-seq data
| Global functions | |
|---|---|
| BreakPoint | Man page |
| GenotypeBreaks | Man page Source code |
| RefineBreaks | Source code |
| breakSeekr | Man page Source code |
| breakpointR | Man page |
| breakpointR-package | Man page |
| breakpointr | Man page Source code |
| breakpointr2UCSC | Man page Source code |
| collapseBins | Man page Source code |
| confidenceInterval | Man page Source code |
| confidenceInterval.binomial | Man page Source code |
| createCompositeFile | Man page Source code |
| deltaWCalculator | Man page Source code |
| deltaWCalculatorVariousWindows | Man page Source code |
| exportRegions | Man page Source code |
| genotype.binom | Man page Source code |
| genotype.fisher | Man page Source code |
| genotyping | Man page |
| hotspotter | Man page Source code |
| insertchr | Man page Source code |
| loadFromFiles | Man page Source code |
| mergeGR | Source code |
| messageU | Source code |
| plotBreakpoints | Man page Source code |
| plotBreakpointsPerChr | Man page Source code |
| plotHeatmap | Man page Source code |
| ranges2UCSC | Man page Source code |
| readBamFileAsGRanges | Man page Source code |
| readConfig | Man page Source code |
| removeDoubleSCEs | Man page Source code |
| removeReadPileupSpikes | Man page Source code |
| runBreakpointr | Man page Source code |
| startTimedMessage | Source code |
| stopTimedMessage | Source code |
| summarizeBreaks | Man page Source code |
| synchronizeReadDir | Man page Source code |
| transCoord | Man page Source code |
| writeConfig | Man page Source code |
