deltaWCalculator: Calculate deltaWs
In breakpointR: Find breakpoints in Strand-seq data

Description Usage Arguments Value Author(s) See Also Examples

This function will calculate deltaWs from a GRanges-class object with read fragments.

1	deltaWCalculator(frags, reads.per.window = 100)

`frags`	A `GRanges-class` with read fragments (see `readBamFileAsGRanges`).
`reads.per.window`	Number of reads in each dynamic window.

The input frags with additional meta-data columns.

Aaron Taudt

readBamFileAsGRanges

## Get an example file
exampleFolder <- system.file("extdata", "example_bams", package="breakpointRdata")
exampleFile <- list.files(exampleFolder, full.names=TRUE)[1]
## Load the file
fragments <- readBamFileAsGRanges(exampleFile, pairedEndReads=FALSE, chromosomes='chr22')
## Calculate deltaW values
dw <- deltaWCalculator(fragments)