summarizeBreaks: Compile breakpoint summary table

In breakpointR: Find breakpoints in Strand-seq data

Description

This function will calculate deltaWs from a GRanges-class object with read fragments.

Usage

summarizeBreaks(breakpoints)

Arguments

breakpoints

A list containing breakpoints stored in GRanges-class object.

Value

A data.frame of compiled breakpoints together with confidence intervals.

Author(s)

David Porubsky

Examples

## Get some files that you want to load
exampleFolder <- system.file("extdata", "example_results", package="breakpointRdata")
file <- list.files(exampleFolder, full.names=TRUE)[1]
breakpoints <- get(load(file))[c('breaks', 'confint')]
summarizeBreaks(breakpoints)

breakpointR documentation built on Nov. 8, 2020, 8:04 p.m.