Files in breakpointR
Find breakpoints in Strand-seq data
breakpointR_logo.png
README.md
NEWS
NAMESPACE
DESCRIPTION
LICENSE
build/vignette.rds
R/breakpointR-package.R
R/runBreakpointr.R
R/breakpointr.R
R/breakSeekr.R
R/utils.R
R/loadFromFiles.R
R/exportRegions.R
R/hotspotter.R
R/exportUCSC.R
R/rwConfig.R
R/createCompositeFile.R
R/syncReads.R
R/plotting.R
R/summarizeBreaks.R
R/documented_objects.R
R/GenotypeBreaks.R
R/deltaWCalculator.R
R/importReads.R
R/confidenceInterval.R
R/global.R
R/timedMessage.R
vignettes/breakpointR.Rnw
man/createCompositeFile.Rd
man/removeDoubleSCEs.Rd
man/synchronizeReadDir.Rd
man/plotBreakpointsPerChr.Rd
man/plotBreakpoints.Rd
man/ranges2UCSC.Rd
man/confidenceInterval.Rd
man/insertchr.Rd
man/plotHeatmap.Rd
man/readBamFileAsGRanges.Rd
man/breakSeekr.Rd
man/transCoord.Rd
man/breakpointR-package.Rd
man/writeConfig.Rd
man/deltaWCalculatorVariousWindows.Rd
man/loadFromFiles.Rd
man/BreakPoint.Rd
man/readConfig.Rd
man/genotyping.Rd
man/summarizeBreaks.Rd
man/genotype.fisher.Rd
man/collapseBins.Rd
man/deltaWCalculator.Rd
man/genotype.binom.Rd
man/hotspotter.Rd
man/runBreakpointr.Rd
man/removeReadPileupSpikes.Rd
man/exportRegions.Rd
man/breakpointr2UCSC.Rd
man/confidenceInterval.binomial.Rd
man/breakpointr.Rd
tests/testthat.R
tests/testthat/test_breakNum.R
tests/testthat/withbreaks_exampleFile.RData
tests/testthat/nobreaks_exampleFile.RData
inst/doc/breakpointR.pdf
inst/doc/breakpointR.Rnw
inst/doc/breakpointR.R
