getGenProfs: Get Genetic Profile from selected Studies
In canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC
Description
Usage
Value
Examples
Description
Get Genetic Profile from selected Studies
Usage
1
Value
dataframe with genetic profil
Examples
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cgds<-CGDS("http://www.cbioportal.org/")
# Get list of cancer studies at server
Studies <- getCancerStudies(cgds)[,2]
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy <- getCancerStudies(cgds)[2,1]
mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1]
# Get available genetic profiles
mygeneticprofile <- getGeneticProfiles(cgds,mycancerstudy)[4,1]
## Not run:
getGenProfs()
## End(Not run)
canceR documentation built on Nov. 8, 2020, 7:21 p.m.
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Description Usage Value Examples
Description
Get Genetic Profile from selected Studies
Usage
1 |
Value
dataframe with genetic profil
Examples
1 2 3 4 5 6 7 8 9 10 11 12 | cgds<-CGDS("http://www.cbioportal.org/")
# Get list of cancer studies at server
Studies <- getCancerStudies(cgds)[,2]
# Get available case lists (collection of samples) for a given cancer study
mycancerstudy <- getCancerStudies(cgds)[2,1]
mycaselist <- getCaseLists(cgds,mycancerstudy)[1,1]
# Get available genetic profiles
mygeneticprofile <- getGeneticProfiles(cgds,mycancerstudy)[4,1]
## Not run:
getGenProfs()
## End(Not run)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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