getClinicData_MultipleCases: get Clinical Data for Multiple Cases. User needs to select at...

In canceR: A Graphical User Interface for accessing and modeling the Cancer Genomics Data of MSKCC

Description

get Clinical Data for Multiple Cases. User needs to select at least one case to run this function. Get clinical data for more one or multiple cases.

Usage

getClinicData_MultipleCases(getSummaryGSEAExists)

Arguments

getSummaryGSEAExists

if equal to 0, the clinical data is displayed in table. if the argument is equal to 1, the clinical data is used to summarise GSEA analysis results.

Value

dataframe with clinical data

Examples

##Load Session
readRDS(paste(path.package("canceR"),"/extdata/rdata/brca_tcga73genes.rds", sep=""))
## Select Case
myGlobalEnv <- new.env(parent = emptyenv())
myGlobalEnv$curselectCases <- 2
## get Clinical data
## Not run: 
getClinicData_MultipleCases(getSummaryGSEAExists = 0)

## End(Not run)

canceR documentation built on Nov. 8, 2020, 7:21 p.m.