API for chopsticks
The 'snp.matrix' and 'X.snp.matrix' Classes
| Global functions | |
|---|---|
| .cbind2 | Source code |
| .contingency.table | Source code |
| .forceHom | Source code |
| .guessSex | Source code |
| .ld.with.internal | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .rbind2 | Source code |
| Asnps | Man page |
| Autosomes | Man page |
| X.snp-class | Man page |
| X.snp.matrix-class | Man page |
| Xchromosome | Man page |
| Xsnps | Man page |
| [,X.snp.matrix,ANY,ANY,ANY-method | Man page |
| [,X.snp.matrix-method | Man page |
| [,snp.matrix,ANY,ANY,ANY-method | Man page |
| [,snp.matrix-method | Man page |
| [<-,X.snp.matrix,ANY,ANY,X.snp.matrix-method | Man page |
| cbind | Man page |
| cbind,snp.matrix-method | Man page |
| cbind2 | Man page |
| cbind2,snp.matrix,snp.matrix-method | Man page |
| coerce,X.snp,character-method | Man page |
| coerce,X.snp,genotype-method | Man page |
| coerce,X.snp,numeric-method | Man page |
| coerce,X.snp.matrix,character-method | Man page |
| coerce,matrix,snp.matrix-method | Man page |
| coerce,snp,character-method | Man page |
| coerce,snp,genotype-method | Man page |
| coerce,snp,numeric-method | Man page |
| coerce,snp.matrix,X.snp.matrix-method | Man page Man page |
| coerce,snp.matrix,character-method | Man page |
| coerce,snp.matrix,numeric-method | Man page |
| convert.snpMatrix | Man page Source code |
| convert.snpMatrix.dir | Man page Source code |
| epsout.ld.snp | Man page |
| for.exercise | Man page |
| genotype-class | Man page |
| glm.test.control | Man page Source code |
| haplotype-class | Man page |
| ibs.stats | Man page |
| ibsCount | Man page Source code |
| ibsDist | Man page Source code |
| initialize,X.snp.matrix-method | Man page |
| initialize,snp.matrix-method | Man page |
| is.na,snp.matrix-method | Man page |
| ld.snp | Man page Source code |
| ld.with | Man page Source code |
| ld.with,snp.matrix,character-method | Man page |
| niceprint | Man page Source code |
| pair.result.ld.snp | Man page Source code |
| plot.snp.dprime | Man page Source code |
| print.snp.dprime | Man page Source code |
| qq.chisq | Man page Source code |
| rbind | Man page |
| rbind,snp.matrix-method | Man page |
| rbind2 | Man page |
| rbind2,snp.matrix,snp.matrix-method | Man page |
| read.HapMap.data | Man page Source code |
| read.pedfile.info | Man page Source code |
| read.pedfile.map | Man page Source code |
| read.snps.chiamo | Man page Source code |
| read.snps.long | Man page Source code |
| read.snps.long.old | Man page Source code |
| read.snps.pedfile | Man page Source code |
| read.wtccc.signals | Man page Source code |
| row.summary | Man page Source code |
| show,X.snp-method | Man page |
| show,X.snp.matrix-method | Man page |
| show,snp-method | Man page |
| show,snp.matrix-method | Man page |
| single.snp.tests | Man page Source code |
| snp-class | Man page |
| snp.cbind | Man page Source code |
| snp.cor | Man page Source code |
| snp.dprime-class | Man page |
| snp.lhs.tests | Man page Source code |
| snp.matrix-class | Man page |
| snp.post | Man page Source code |
| snp.pre | Man page Source code |
| snp.rbind | Man page Source code |
| snp.rhs.tests | Man page |
| snp.support | Man page |
| snpMatrix | Man page |
| snpMatrix-package | Man page |
| snps.10 | Man page |
| subject.data | Man page |
| subject.support | Man page |
| summary,X.snp.matrix-method | Man page |
| summary,snp.matrix-method | Man page |
| testdata | Man page |
| write.snp.matrix | Man page Source code |
| wtccc.sample.list | Man page Source code |
| xxt | Man page Source code |
