API for clipper
Gene Set Analysis Exploiting Pathway Topology
| Global functions | |
|---|---|
| addNames | Source code |
| bestFragment | Source code |
| bestFragmentOnPath | Source code |
| clipper | Man page Source code |
| clipperAllRoots | Man page Source code |
| cliqueMeanTest | Man page Source code |
| cliqueMixedTest | Man page Source code |
| cliquePairedTest | Man page Source code |
| cliqueParamTest | Source code |
| cliqueVarianceTest | Man page Source code |
| cmpLists | Source code |
| completeFormat | Source code |
| computeSimilarity | Source code |
| computeTestValue | Source code |
| consecutiveFragments | Source code |
| deleteEdge | Man page Source code |
| easyClip | Man page |
| easyLook | Man page |
| edgeList | Source code |
| estimateCov | Source code |
| estimateExprCov | Source code |
| extractCliquesFromDag | Source code |
| extractEnds | Source code |
| extractStarts | Source code |
| formatBestSubPath | Source code |
| getBest | Source code |
| getGraphEntryGenes | Man page Source code |
| getJunctionTreePaths | Man page Source code |
| getperms | Source code |
| hote4mean | Source code |
| hoteIPF | Source code |
| hotePaired | Source code |
| insertValue | Source code |
| markMultiple | Source code |
| mmmoralize | Source code |
| multT | Source code |
| nameCliques | Man page Source code |
| pathQ | Man page Source code |
| permute | Source code |
| plotInCytoscape | Man page Source code |
| prunePaths | Man page Source code |
| removeNArows | Source code |
| removeSelfLoops | Source code |
| retrieveInvolvedGenes | Source code |
| runCoreClipper | Source code |
| runPathwayVar | Source code |
| runVarianceTest | Source code |
| symbolCount | Source code |
