Man pages for clipper
Gene Set Analysis Exploiting Pathway Topology
| clipper | Dissect the pathway to find the path with the greatest... |
| clipperAllRoots | Dissect the pathway to find the path with the greatest... |
| cliqueMeanTest | Mean test for cliques. |
| cliqueMixedTest | Mean test for cliques. |
| cliquePairedTest | Paired mean test for cliques. |
| cliqueVarianceTest | Variance test for cliques. |
| deleteEdge | Remove an edge from 'graphNel' object. |
| easyClip | Easy clip analysis. |
| easyLook | Summarize clipper output. |
| getGraphEntryGenes | Extract all the possible entry point (genes with no entering... |
| getJunctionTreePaths | Extract the shortest paths along the junction tree of the... |
| nameCliques | Generate clique names from their own elements. |
| pathwayTest | Whole pathway test using qpipf. |
| plotInCytoscape | Plot a pathway graph in Cytoscape highlighting the relevant... |
| prunePaths | Summarize the paths obtained by clipper according to their... |
