Gene Set Analysis Exploiting Pathway Topology

Global functions | |
---|---|

addNames | Source code |

bestFragment | Source code |

bestFragmentOnPath | Source code |

clipper | Man page Source code |

clipperAllRoots | Man page Source code |

cliqueMeanTest | Man page Source code |

cliqueMixedTest | Man page Source code |

cliquePairedTest | Man page Source code |

cliqueParamTest | Source code |

cliqueVarianceTest | Man page Source code |

cmpLists | Source code |

completeFormat | Source code |

computeSimilarity | Source code |

computeTestValue | Source code |

consecutiveFragments | Source code |

deleteEdge | Man page Source code |

easyClip | Man page Source code |

easyLook | Man page Source code |

edgeList | Source code |

estimateCov | Source code |

estimateExprCov | Source code |

extractCliquesFromDag | Source code |

extractEnds | Source code |

extractStarts | Source code |

formatBestSubPath | Source code |

getBest | Source code |

getGraphEntryGenes | Man page Source code |

getJunctionTreePaths | Man page Source code |

getperms | Source code |

hote4mean | Source code |

hoteIPF | Source code |

hotePaired | Source code |

insertValue | Source code |

markMultiple | Source code |

mmmoralize | Source code |

multT | Source code |

nameCliques | Man page Source code |

pathQ | Man page Source code |

permute | Source code |

plotInCytoscape | Man page Source code |

prunePaths | Man page Source code |

removeNArows | Source code |

removeSelfLoops | Source code |

retrieveInvolvedGenes | Source code |

runCoreClipper | Source code |

runPathwayVar | Source code |

runVarianceTest | Source code |

symbolCount | Source code |

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