clusterExperiment: Compare clusterings for single-cell sequencing

This package provides functions for running and comparing many different clusterings of single-cell sequencing data.

AuthorElizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]
Date of publicationNone
MaintainerElizabeth Purdom <epurdom@stat.berkeley.edu>
LicenseArtistic-2.0
Version1.0.0

View on Bioconductor

Files in this package

clusterExperiment/DESCRIPTION
clusterExperiment/NAMESPACE
clusterExperiment/NEWS
clusterExperiment/R
clusterExperiment/R/AllClasses.R clusterExperiment/R/AllGenerics.R clusterExperiment/R/AllHelper.R clusterExperiment/R/JiashinJiCode.R clusterExperiment/R/addClusters.R clusterExperiment/R/builtInClusterSubsampleFunctions.R clusterExperiment/R/clusterContrasts.R clusterExperiment/R/clusterD.R clusterExperiment/R/clusterLabels.R clusterExperiment/R/clusterMany.R clusterExperiment/R/clusterSingle.R clusterExperiment/R/combineMany.R clusterExperiment/R/dataCreation.R clusterExperiment/R/getFeatures.R clusterExperiment/R/internalFunctions.R clusterExperiment/R/makeBlankData.R clusterExperiment/R/makeDendrogram.R clusterExperiment/R/mergeClusters.R clusterExperiment/R/plotClusters.R clusterExperiment/R/plotHeatmap.R clusterExperiment/R/plottingHelpers.R clusterExperiment/R/rsec.R clusterExperiment/R/seqCluster.R clusterExperiment/R/subsampleClustering.R clusterExperiment/R/transformFunction.R clusterExperiment/R/workflowClusters.R
clusterExperiment/build
clusterExperiment/build/vignette.rds
clusterExperiment/data
clusterExperiment/data/simData.rda
clusterExperiment/inst
clusterExperiment/inst/doc
clusterExperiment/inst/doc/clusterExperimentTutorial.R
clusterExperiment/inst/doc/clusterExperimentTutorial.Rmd
clusterExperiment/inst/doc/clusterExperimentTutorial.html
clusterExperiment/man
clusterExperiment/man/ClusterExperiment-class.Rd clusterExperiment/man/ClusterExperiment-methods.Rd clusterExperiment/man/RSEC.Rd clusterExperiment/man/addClusters.Rd clusterExperiment/man/clusterContrasts.Rd clusterExperiment/man/clusterD.Rd clusterExperiment/man/clusterMany.Rd clusterExperiment/man/clusterSingle.Rd clusterExperiment/man/combineMany.Rd clusterExperiment/man/convertClusterLegend.Rd clusterExperiment/man/getBestFeatures.Rd clusterExperiment/man/makeDendrogram.Rd clusterExperiment/man/mergeClusters.Rd clusterExperiment/man/plotClusters.Rd clusterExperiment/man/plotHeatmap.Rd clusterExperiment/man/plottingFunctions.Rd clusterExperiment/man/seqCluster.Rd clusterExperiment/man/simData.Rd clusterExperiment/man/subsampleClustering.Rd clusterExperiment/man/transform.Rd clusterExperiment/man/workflowClusters.Rd
clusterExperiment/tests
clusterExperiment/tests/testthat
clusterExperiment/tests/testthat.R
clusterExperiment/tests/testthat/create_objects.R
clusterExperiment/tests/testthat/test_RSEC.R
clusterExperiment/tests/testthat/test_clusterMany.R
clusterExperiment/tests/testthat/test_clusterSingle.R
clusterExperiment/tests/testthat/test_combineMany.R
clusterExperiment/tests/testthat/test_constructor.R
clusterExperiment/tests/testthat/test_dendrogram.R
clusterExperiment/tests/testthat/test_getBestFeatures.R
clusterExperiment/tests/testthat/test_internalFunctions.R
clusterExperiment/tests/testthat/test_mergeClusters.R
clusterExperiment/tests/testthat/test_plotting.R
clusterExperiment/vignettes
clusterExperiment/vignettes/bibFile.bib
clusterExperiment/vignettes/clusterExperimentTutorial.Rmd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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