Takes an input a ClusterExperiment object and returns the parameter values used in creating the clusters that were created by 'clusterMany'
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a ClusterExperiment object that contains clusterings from running
argument that can be either numeric or character vector
indicating the clusterings to be used. See details of
logical, indicating whether all clusterings with
logical. Whether to simplify the output so as to remove features that do not change across the clusterings.
The method simply parses the
clusterLabels of the indicated
clusterings, relying on the specific format used by
create labels. The function will only allow the parsing to be performed on
those clusterings with a 'clusterMany' clusterType. If the user has
manipulated the clusterLabels manually or manually identified the
clusterType of a clustering as 'clusterMany', this function may create
unexpected results or errors. Similarly, it cannot be used on 'clusterMany'
results from an old iteration (e.g. that have type 'clusterMany.1')
Specifically, it splits the label of each clustering by the character ",", as indicating the different parameters; this should return a value of form "ABC=123". The function then pulls out the numeric value ('123') and associates that value as the value of the parameter ('ABC')
Returns a data.frame where the column names are the parameter names, and the entries are the values of the parameter for the indicated clustering. The column 'clusteringIndex' identifies the index of the clustering in the full set of clusterings of the given ClusterExperiment object.
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