Files in clusterExperiment
Compare Clusterings for Single-Cell Sequencing

NEWS
DESCRIPTION
NAMESPACE
inst/doc/clusterExperimentTutorial.html
inst/doc/clusterExperimentTutorial.R inst/doc/clusterExperimentTutorial.Rmd
vignettes/bibFile.bib
vignettes/clusterExperimentTutorial.Rmd R/plottingHelpers.R R/clusterMany.R R/subset.R R/AllHelperClusterFunction.R R/deprecateFunctions.R R/rsec.R R/plotBarplot.R R/AllChecks.R R/transformFunction.R R/assignUnassigned.R R/plotClustersWorkflow.R R/plotClustersTable.R R/clusterContrasts.R R/subsampleLoop.R R/internalClusterFunctions.R R/getFeatures.R R/builtInClusterFunctions.R R/subsampleClustering.R R/plotFeatureBoxplot.R R/plotHeatmap.R R/updateObject.R R/RcppExports.R R/dataCreation.R R/internalFunctions.R R/clusterSingle.R R/AllClasses.R R/getParams.R R/mainClustering.R R/makeDendrogram.R R/makeReducedDims.R R/mergeClusters.R R/JiashinJiCode.R R/makeFilterStats.R R/plotFeatureScatter.R R/plotClusters.R R/AllGenerics.R R/workflowClusters.R R/plotContrastHeatmap.R R/AllHelper.R R/getReducedData.R R/seqCluster.R R/plotDendrogram.R R/makeBlankData.R R/AllHelperFilter.R R/makeConsensus.R R/addClusterings.R R/plotReduceDim.R
src/Makevars.win
src/subsampleLoop.cpp
src/search_pairs.cpp
src/RcppExports.cpp
src/Makevars
man/plotHeatmap.Rd man/builtInClusteringFunctions.Rd man/RSEC.Rd man/ClusterFunction-methods.Rd man/workflowClusters.Rd man/updateObject.Rd man/mainClustering.Rd man/assignUnassigned.Rd man/transformData.Rd man/plotFeatureBoxplot.Rd man/mergeClusters.Rd man/clusterContrasts.Rd man/search_pairs.Rd man/ClusterFunction-class.Rd man/plotBarplot.Rd man/plotClusters.Rd man/clusterExperiment-deprecated.Rd man/plotDendrogram.Rd man/plotReducedDims.Rd man/subsampleClustering.Rd man/plotFeatureScatter.Rd man/makeDendrogram.Rd man/reduceFunctions.Rd man/makeConsensus.Rd man/clusterMany.Rd man/clusterSingle.Rd man/plotContrastHeatmap.Rd man/plottingFunctions.Rd man/plotClustersTable.Rd man/ClusterExperiment-class.Rd man/plotClustersWorkflow.Rd man/getBestFeatures.Rd man/seqCluster.Rd man/rsecFluidigm.Rd man/getClusterManyParams.Rd man/ClusterExperiment-methods.Rd man/subset.Rd man/simData.Rd man/addClusterings.Rd
build/vignette.rds
tests/testthat_a-c.R tests/testthat_j-z.R tests/testthat_d-i.R tests/testthat/test-constructorClusterFunction.R tests/testthat/test-dendrogram.R tests/testthat/setup_create_objects.R tests/testthat/test-internalFunctions.R tests/testthat/test-dimReduce.R tests/testthat/test-constructor.R tests/testthat/test-pca.R tests/testthat/test-makeConsensus.R tests/testthat/test-clusterSingle.R tests/testthat/test-otherPlots.R tests/testthat/test-assays.R tests/testthat/test-subsampleClustering.R tests/testthat/test-RSEC.R tests/testthat/test-mergeClusters.R tests/testthat/test-heatmaps.R tests/testthat/test-getBestFeatures.R tests/testthat/test-clusterMany.R
data/simData.rda
data/rsecFluidigm.rda
clusterExperiment documentation built on Nov. 1, 2018, 2:38 a.m.