Description Usage Arguments Value Examples
Make an MAlike plot of enriched annotations, similar to the commonly used plots in differential expression analysis.
1 2 3 4 5 6 7 8 9 10  enrichMAplot(x, pvalue = "pvals", siglev = 0.05, size = 1,
alpha = 1)
## S4 method for signature 'list'
enrichMAplot(x, pvalue = "pvals", siglev = 0.05,
size = 1, alpha = 1)
## S4 method for signature 'AnnotatedDataFrame'
enrichMAplot(x, pvalue = "pvals",
siglev = 0.05, size = 1, alpha = 1)

x 

pvalue 
Character, one of 
siglev 
Numeric, significance level to be used for plotting. 
size 
Numeric, size of points in plot. 
alpha 
Numeric, between 0 and 1, indicating points' transparency. 
A ggplot
object.
1 2 3 4 5 6 7 8 9 10  require(ggplot2)
HD59_KO
enrichMAplot(HD59_KO)
enrichMAplot(HD59_KO, pvalue = "padj")
enrichMAplot(HD59_KO, siglev = 0.01)
enrichMAplot(HD59_KO, pvalue = "padj", siglev = 0.01)
x < list(disease = LD94_KO, healthy = HD59_KO)
enrichMAplot(x)

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