CNV.process: CNV.process
In conumee: Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Description
Usage
Arguments
Details
Value
Author(s)
Description
Given a case index, control indices, CNV.data, and CNV.anno,
along with hints about sex chromosomes, call CN for a sample.
Usage
1
2
3
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5
CNV.process(case, controls, CNdata, anno)
## S4 method for signature 'integer,integer,CNV.data,CNV.anno'
CNV.process(case, controls,
CNdata, anno)
Arguments
case
index of the case to process CN for.
controls
indices of the control samples.
CNdata
CNV.data object.
anno
CNV.anno object.
Details
This method wraps most of conumee, and tries to call sex
chromosomes properly using chrX/chrY information derived from the
source GenomicRatioSet. For female subjects, chrY is dropped.
Value
CNV.analysis object.
Author(s)
Tim Triche, Jr. tim.triche@gmail.com
conumee documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Details Value Author(s)
Description
Given a case index, control indices, CNV.data, and CNV.anno, along with hints about sex chromosomes, call CN for a sample.
Usage
1 2 3 4 5 | CNV.process(case, controls, CNdata, anno)
## S4 method for signature 'integer,integer,CNV.data,CNV.anno'
CNV.process(case, controls,
CNdata, anno)
|
Arguments
case |
index of the case to process CN for. |
controls |
indices of the control samples. |
CNdata |
|
anno |
|
Details
This method wraps most of conumee, and tries to call sex chromosomes properly using chrX/chrY information derived from the source GenomicRatioSet. For female subjects, chrY is dropped.
Value
CNV.analysis object.
Author(s)
Tim Triche, Jr. tim.triche@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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