read.450k.url: read.450k.url
In conumee: Enhanced copy-number variation analysis using Illumina DNA methylation arrays
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
Read IDAT files from the web.
Usage
1
read.450k.url(url = NULL, idat = NULL)
Arguments
url
URL of the directory in which the IDAT files are located.
idat
Vector of IDAT names. url and idat default to the TCGA example described in the vignette.
Details
This method downloads the provided list of IDAT files to a temporary folder (using the RCurl package). It then uses the 'read.450k.exp' method of the 'minfi' package.
Value
RGChannelSet object.
Author(s)
Volker Hovestadt conumee@hovestadt.bio
Examples
1
RGsetTCGA <- read.450k.url()
conumee documentation built on Nov. 8, 2020, 6 p.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
Read IDAT files from the web.
Usage
1 | read.450k.url(url = NULL, idat = NULL)
|
Arguments
url |
URL of the directory in which the IDAT files are located. |
idat |
Vector of IDAT names. |
Details
This method downloads the provided list of IDAT files to a temporary folder (using the RCurl package). It then uses the 'read.450k.exp' method of the 'minfi' package.
Value
RGChannelSet object.
Author(s)
Volker Hovestadt conumee@hovestadt.bio
Examples
1 | RGsetTCGA <- read.450k.url()
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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