ch2_subset: Subset for Paired Two-Channel ExpressionSet
In crossmeta: Cross Platform Meta-Analysis of Microarray Data
Description
Usage
Arguments
Value
Description
Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation.
If not using one channel in contrasts (e.g. because all reference RNA) and have paired design,
better to treat as single channel so that can use duplicateCorrelation.
Usage
1
ch2_subset(eset, prev_anal)
Arguments
eset
ExpressionSet
Value
ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.
crossmeta documentation built on Nov. 8, 2020, 8 p.m.
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Description Usage Arguments Value
Description
Two-channel esets use intraspotCorrelation and lmscFit so can't use duplicateCorrelation. If not using one channel in contrasts (e.g. because all reference RNA) and have paired design, better to treat as single channel so that can use duplicateCorrelation.
Usage
1 | ch2_subset(eset, prev_anal)
|
Arguments
eset |
ExpressionSet |
Value
ExpressionSet. If two-channel, paired and one channel not used will subset to used channel.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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