open_raw_illum: Open raw Illumina microarray files.

In crossmeta: Cross Platform Meta-Analysis of Microarray Data

Description

Helper function to open raw Illumina microarray files in order to check that they are formatted correctly. For details on correct format, please see 'Checking Raw Illumina Data' in vignette.

Usage

open_raw_illum(gse_names, data_dir = getwd())

Arguments

gse_names	Character vector of Illumina GSE names to open.
data_dir	String specifying directory with GSE folders.

Value

Character vector of successfully formated Illumina GSE names.

Examples

library(lydata)

# Illumina GSE names
illum_names <- c("GSE50841", "GSE34817", "GSE29689")

# location of raw data
data_dir <- system.file("extdata", package = "lydata")

# open raw data files with default text editor
# open_raw_illum(illum_names)

Example output

crossmeta documentation built on Nov. 8, 2020, 8 p.m.