get_raw: Download and unpack microarray supplementary files from GEO.

In crossmeta: Cross Platform Meta-Analysis of Microarray Data

Description

Downloads and unpacks microarray supplementary files from GEO. Files are stored in the supplied data directory under the GSE name.

Usage

get_raw(gse_names, data_dir = getwd())

Arguments

gse_names	Character vector of GSE names to download.
data_dir	String specifying directory for GSE folders.

Value

NULL (for download/unpack only).

See Also

load_raw.

Examples

get_raw("GSE41845")

Example output

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41845/suppl/
No supplemental files found.
Check URL manually if in doubt
https://ftp.ncbi.nlm.nih.gov/geo/series/GSE41nnn/GSE41845/suppl/

crossmeta documentation built on Nov. 8, 2020, 8 p.m.