fix_illum_headers: Attempts to fix Illumina raw data header
In crossmeta: Cross Platform Meta-Analysis of Microarray Data
Description
Usage
Arguments
Value
View source: R/illum_headers.R
Description
Reads raw data files and tries to fix them up so that they can be loaded by read.ilmn.
Usage
1
fix_illum_headers(elist_paths, eset = NULL)
Arguments
elist_paths
Path to Illumina raw data files. Usually contain patterns:
non_normalized.txt, raw.txt, or _supplementary_.txt
eset
ExpressionSet from getGEO.
Value
Character vector for annotation argument to read.ilmn. Fixed raw data files
are saved with filename ending in _fixed.txt
crossmeta documentation built on Nov. 8, 2020, 8 p.m.
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Description Usage Arguments Value
View source: R/illum_headers.R
Description
Reads raw data files and tries to fix them up so that they can be loaded by read.ilmn.
Usage
1 | fix_illum_headers(elist_paths, eset = NULL)
|
Arguments
elist_paths |
Path to Illumina raw data files. Usually contain patterns: non_normalized.txt, raw.txt, or _supplementary_.txt |
eset |
ExpressionSet from getGEO. |
Value
Character vector for annotation argument to read.ilmn. Fixed raw data files
are saved with filename ending in _fixed.txt
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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