Global functions | |
---|---|
$,readParam-method | Man page |
.activeChrs | Source code |
.checkLibSizes | Source code |
.checkNestedRanges | Source code |
.check_bimodality | Source code |
.check_test_inputs | Source code |
.coerceFragments | Source code |
.collateExt | Source code |
.correlate_reads | Source code |
.decideStrand | Source code |
.extendSE | Source code |
.extendSEdir | Source code |
.extractPE | Source code |
.extractSE | Source code |
.fetch_norm_details | Source code |
.formatColData | Source code |
.general_test_combiner | Source code |
.getDiscard | Source code |
.getGlobalBg | Source code |
.getPValCol | Source code |
.getWindowNum | Source code |
.get_total_pts | Source code |
.get_two_one_sided_results | Source code |
.is_pt_at_start | Source code |
.make_BamFile | Source code |
.make_BamFiles | Source code |
.make_one_sided | Source code |
.overlapStats | Source code |
.parseFCcol | Source code |
.profile_sites | Source code |
.region_counts | Source code |
.setupDiscard | Source code |
.toGRanges | Source code |
.verify_ranges_tabs | Source code |
.weightedFDR | Source code |
.window_counts | Source code |
asDGEList | Man page |
asDGEList,SummarizedExperiment-method | Man page |
calculateCPM | Man page Source code |
checkBimodality | Man page Source code |
cluster-direction | Man page |
clusterFDR | Man page Source code |
clusterWindows | Man page Source code |
clusterWindowsList | Man page Source code |
combineOverlaps | Man page Source code |
combineTests | Man page Source code |
consolidateOverlaps | Man page Source code |
consolidateTests | Man page Source code |
consolidateWindows | Man page Source code |
controlClusterFDR | Man page Source code |
correlateReads | Man page Source code |
csaw | Man page |
csawUsersGuide | Man page Source code |
defunct | Man page |
detailRanges | Man page Source code |
empiricalFDR | Man page Source code |
empiricalOverlaps | Man page Source code |
extractReads | Man page Source code |
filterWindows | Man page Source code |
filterWindowsControl | Man page Source code |
filterWindowsGlobal | Man page Source code |
filterWindowsLocal | Man page Source code |
filterWindowsProportion | Man page Source code |
findMaxima | Man page Source code |
findOverlapsList | Man page Source code |
getBestOverlaps | Man page Source code |
getBestTest | Man page Source code |
getPESizes | Man page Source code |
getWidths | Man page Source code |
maximizeCcf | Man page Source code |
mergeResults | Man page Source code |
mergeResultsList | Man page Source code |
mergeWindows | Man page Source code |
mergeWindowsList | Man page Source code |
minimalTests | Man page Source code |
mixedClusters | Man page Source code |
mixedOverlaps | Man page Source code |
mixedTests | Man page Source code |
normFactors | Man page Source code |
normOffsets | Man page Source code |
overlapResults | Man page Source code |
overlapResultsList | Man page Source code |
overlapStats | Man page |
profileSites | Man page Source code |
readParam | Man page Source code |
readParam-class | Man page |
reform | Man page |
reform,readParam-method | Man page |
regionCounts | Man page Source code |
scaleControlFilter | Man page Source code |
scaledAverage | Man page Source code |
show,readParam-method | Man page |
strandedCounts | Man page Source code |
summitOverlaps | Man page Source code |
upweightSummit | Man page Source code |
windowCounts | Man page Source code |
wwhm | Man page Source code |
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