API for cydar
Using Mass Cytometry for Differential Abundance Analyses

Global functions
CyData-class Man page
[,CyData,ANY,ANY,ANY-method Man page
[,CyData,ANY,ANY-method Man page
[,CyData,ANY-method Man page
[<-,CyData,ANY,ANY,CyData-method Man page
cbind,CyData-method Man page
cellAssignments Man page
cellAssignments,CyData-method Man page
cellInformation Man page Source code
cellIntensities Man page Source code
check_cell_data Source code
chosen_markers Source code
col_warning Source code
computeCellWeights Source code
countCells Man page Source code
createColorBar Man page Source code
dnaGate Man page Source code
downsample Source code
expandRadius Man page Source code
findFirstSphere Man page Source code
find_vertex Source code
generateDensity Source code
getCenterCell Man page Source code
getECDF Source code
get_LR_bounds Source code
intensities Man page
intensities,CyData-method Man page
intensityRanges Man page Source code
interpretSpheres Man page Source code
labelSpheres Man page Source code
makeClosestTable Source code
makeHistograms Source code
makeHistoryTable Source code
makeLabPlot Source code
makeMetricTable Source code
makeNavPlot Source code
markernames Man page
markernames,CyData-method Man page
medIntensities Man page Source code
multiIntHist Man page Source code
neighborDistances Man page Source code
normalizeBatch Man page Source code
nterpolate_cols Source code
obtainColours Source code
outlierGate Man page Source code
pickBestMarkers Man page Source code
plotCellIntensity Man page Source code
plotCellLogFC Man page Source code
plotSphereIntensity Man page Source code
plotSphereLogFC Man page Source code
poolCells Man page Source code
prepareCellData Man page Source code
prepareDensity Source code
pullOutMarkers Source code
pull_out_data Source code
quantileDistr Source code
raw_cellAssignments Source code
raw_cellIntensities Source code
raw_cell_id Source code
raw_intensities Source code
raw_metadata Source code
raw_precomputed Source code
raw_rowdata Source code
raw_sample_id Source code
raw_unusedIntensities Source code
rescaleDistr Source code
scat Source code
show,CyData-method Man page
spatialFDR Man page Source code
subsetToIndex Source code
transformDistr Source code
cydar documentation built on Nov. 1, 2018, 5 a.m.