Man pages for dSimer
Integration of Disease Similarity Methods

BOGcalculate disease similarity by BOG
CosineDFVcalculate disease similarity by using feature vectors
d2g_fundo_entrezidd2g_fundo_entrezid
d2g_fundo_symbold2g_fundo_symbol
d2go_sampled2go_sample
d2g_separationd2g_separation
d2s_hsdnd2s_hsdn
d2s_hsdn_sampled2s_hsdn_sample
dSimer-packageIntegration of Disease Similarity Methods
FunSimcalculate disease similarity by FunSim
get_GOterm2GeneAssosget GO-gene associations
go2g_samplego2g_sample
graphlet_sig_hprdgraphlet_sig_hprd
HumanNet_sampleHumanNet_sample
HypergeometricTestHypergeometric test and multiple testing
ICodcalculate disease similarity by ICod
InformationContentcalculating information content
interactomeinteractome
jaccardindexcalculating Jaccard Index
LLSn2Listconvert data.frame of HumanNet log-likelihood Score to list
Normalizenormalize data
orbit_dependency_countorbit_dependency_count
plot_bipartiteplot disease-gene (or GO term etc.) associations as a...
plot_heatmapsimilarity matrix heatmap plotting
plot_netplot a network based on a symmetric disease similarity matrix
plot_topoplot topological relationship of two gene sets
PPI_HPRDPPI_HPRD
PSBcalculate disease similarity by PSB
Separationcalculating network-based separation of disease pairs
Separation2Similaritya method which convert separation to similarity
setWeightset weight factor
Sun_annotationSun's annotation measure of disease similarity calculating
Sun_functionSun's function measure of disease similarity calculating
Sun_topologySun's topology measure of disease similarity calculating
weightweight
x2y_conv2_y2xconvert x2ylist to y2xlist
x2y_df2listconvert x-y associations
dSimer documentation built on May 31, 2017, 11:30 a.m.