Integration of Disease Similarity Methods

BOG | calculate disease similarity by BOG |

CosineDFV | calculate disease similarity by using feature vectors |

d2g_fundo_entrezid | d2g_fundo_entrezid |

d2g_fundo_symbol | d2g_fundo_symbol |

d2go_sample | d2go_sample |

d2g_separation | d2g_separation |

d2s_hsdn | d2s_hsdn |

d2s_hsdn_sample | d2s_hsdn_sample |

dSimer-package | Integration of Disease Similarity Methods |

FunSim | calculate disease similarity by FunSim |

get_GOterm2GeneAssos | get GO-gene associations |

go2g_sample | go2g_sample |

graphlet_sig_hprd | graphlet_sig_hprd |

HumanNet_sample | HumanNet_sample |

HypergeometricTest | Hypergeometric test and multiple testing |

ICod | calculate disease similarity by ICod |

InformationContent | calculating information content |

interactome | interactome |

jaccardindex | calculating Jaccard Index |

LLSn2List | convert data.frame of HumanNet log-likelihood Score to list |

Normalize | normalize data |

orbit_dependency_count | orbit_dependency_count |

plot_bipartite | plot disease-gene (or GO term etc.) associations as a... |

plot_heatmap | similarity matrix heatmap plotting |

plot_net | plot a network based on a symmetric disease similarity matrix |

plot_topo | plot topological relationship of two gene sets |

PPI_HPRD | PPI_HPRD |

PSB | calculate disease similarity by PSB |

Separation | calculating network-based separation of disease pairs |

Separation2Similarity | a method which convert separation to similarity |

setWeight | set weight factor |

Sun_annotation | Sun's annotation measure of disease similarity calculating |

Sun_function | Sun's function measure of disease similarity calculating |

Sun_topology | Sun's topology measure of disease similarity calculating |

weight | weight |

x2y_conv2_y2x | convert x2ylist to y2xlist |

x2y_df2list | convert x-y associations |

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